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Table 1 Example of combined result dataset

From: CROPPER: a metagene creator resource for cross-platform and cross-species compendium studies

 

Homo sapiens

Mus musculus

Caenorhabditis elegans

Macaca fascicularis

Metagene ID

Affymetrix probe ID

Gene description

Uniprot ID

Gene description

Wormbase Gene ID

Gene description

Affymetrix probe ID

Gene description

MGD59E612

216248_s_at

Orphan nuclear receptor NR4A2 (Orphan nuclear receptor NURR1) (Immediate-early response protein NOT) (Transcriptionally-inducible nuclear receptor).

Q06219

nuclear receptor subfamily 4, group A, member 2

C48D5.1

Nuclear hormone receptor family member nhr-6 (Cnr8).

216248_s_at

Orphan nuclear receptor NR4A2 (Orphan nuclear receptor NURR1) (Immediate-early response protein NOT) (Transcriptionally-inducible nuclear receptor).

MGDH20656

200746_s_at

 

P04901

 

F13D12.7

Guanine nucleotide-binding protein beta subunit 1.

200746_s_at

Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1 (Transducin beta chain 1).

MGDH22681

201533_at

Beta-catenin.

Q02248

catenin (cadherin associated protein), beta 1

K05C4.6

HuMPback (dorsal lumps) family member (hmp-2)

201533_at

Beta-catenin.

MGDH22861

203333_at

Kinesin-associated protein 3 (Smg GDS-associated protein).

P70188

kinesin-associated protein 3

F56C9.1

Putative serine/threonine protein phosphatase F56C9.1 in chromosome III (EC 3.1.3.16).

203333_at

Kinesin-associated protein 3 (Smg GDS-associated protein).

MGDH22922

200075_s_at

Guanylate kinase (EC 2.7.4.8) (GMP kinase).

Q64520

guanylate kinase 1

T03F1.8

 

200075_s_at

Guanylate kinase (EC 2.7.4.8) (GMP kinase).

MGDH23987

217746_s_at

Programmed cell death 6-interacting protein (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95).

O88695

 

R10E12.1

Apoptosis-linked gene 2 interacting protein X 1 (Protein pqn-58) (Protein YNK1).

217746_s_at

Programmed cell death 6-interacting protein (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95).

MGDH2564

203087_s_at

Kinesin-like protein KIF2 (Kinesin-2) (HK2).

P28740

kinesin family member 2A

K11D9.1

Kinesin-Like Protein family member (klp-7)

213598_at

Kinesin-like protein KIF2 (Kinesin-2) (HK2).

MGDH2591

209503_s_at

26S protease regulatory subunit 8 (Proteasome subunit p45) (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1).

P47210

 

Y49E10.1

proteasome Regulatory Particle, ATPase-like family member (rpt-6)

209503_s_at

26S protease regulatory subunit 8 (Proteasome subunit p45) (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1).

MGDH26335

201390_s_at

Casein kinase II subunit beta (CK II beta) (Phosvitin) (G5a).

P13862

 

T01G9.6

Casein kinase II beta subunit (CK II beta).

201390_s_at

Casein kinase II subunit beta (CK II beta) (Phosvitin) (G5a).

MGDH2988

207614_s_at

Cullin-1 (CUL-1).

Q9WTX6

cullin 1

D2045.6

Cullin-1 (Abnormal cell lineage 19 protein).

207614_s_at

Cullin-1 (CUL-1).

MGDH6882

200864_s_at

 

P24410

 

F53G12.1

RAB family member (rab-11.1)

200864_s_at

Ras-related protein Rab-11A (Rab-11) (YL8).

MGDH8694

201220_x_at

 

P56546

C-terminal binding protein 2

F49E10.5

 

210835_s_at

C-terminal-binding protein 2 (CtBP2).

  1. CROPPER was used to combine datasets from four distinct experiments. Metagene identifiers were assigned to each data row. Inspection of the gene descriptions reveals that it is likely that combining has been successfully and metagene identifiers have been assigned to a common group of genes and gene products across the different species and technology platforms.