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Table 1 Log-likelihood scores of training sets and log-posterior probabilities of the true annotations for the PROT3 benchmark. Here D denotes the training alignment data (the HOMSTRAD database without the beta-glycanase SCOP family), A denotes the DSSP annotations of the alignment data, θ D denotes the model with parameters obtained from training on D, and θ G denotes the model with parameters obtained from the GTJ datafiles.

From: XRate: a fast prototyping, training and annotation tool for phylo-grammars

θ log2 P(A, D|θ) log2 P(D|θ) log2 P(A|D, θ)
θ D -173038 -162491 -10547
θ G -238632 -227979 -10653