M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

Table 2 Verifying reliability of selected Alignment frameworks

#	Sequence set	$C$	Identified	Missed	Known	Unknown	Total	Accuracy
1	Mycoplasma 2	649	1188	244	1432	576	2008	82.0%
2	Pyrococcus 2	484	1971	585	2556	675	3231	77.0%
13	Salmonella 5	328	12108	3823	15931	4953	20884	76.0%
18	Entero 10	418	28428	1757	30185	5375	35560	94.2%
19	Entero 15	1218	42617	2883	45550	7291	52791	93.7%

Testing the reliability of five of the alignment frameworks generated in Table 1. $C$ is the number of multi-MUM clusters analyzed for orthologs, Identified is the total number of genes with one or more identified orthologs in its corresponding multi-MUM cluster, Missed the total number of proteins in multi-MUM clusters with no orthologs, Unknown the total number of genes that have yet to be fully classified, Total the total number of genes in all of the multi-MUM clusters in all genomes, and Accuracy the number of Identified orthologs divided by the total Known (Identified + Missed).

ISSN: 1471-2105