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Table 5 Location of CpGProD islands

From: CpGcluster: a distance-based algorithm for CpG-island detection

      

P-values

 

Class*

# CpG islands

Length ± SD

CpG Density ± SD

Obs/Exp Ratio ± SD

%GG ± SD

P25

Median

P75

PhastCons overlap (%)

Human:

         

L1

7,310

1,831.5 ± 875.8

0.06 ± 0.01

0.74 ± 0.09

59.3 ± 5.0

2.30E-78

4.20E-51

7.06E-33

21.01

L2

3,542

933.0 ± 599.3

0.04 ± 0.01

0.62 ± 0.08

53.6 ± 5.8

1.40E-17

1.35E-09

3.91E-07

13.66

L3

10,582

814.5 ± 436.2

0.04 ± 0.01

0.61 ± 0.07

53.4 ± 5.6

1.10E-13

3.68E-09

4.36E-07

10.66

L4

1,218

1,097.2 ± 775.8

0.05 ± 0.02

0.63 ± 0.08

56.2 ± 6.8

6.79E-32

5.47E-12

1.35E-07

16.63

NG

54,141

988.3 ± 739.8

0.05 ± 0.02

0.63 ± 0.09

54.2 ± 6.1

2.30E-21

2.03E-10

1.33E-07

12.15

Mouse:

         

L1

7,938

1,463.4 ± 576.0

0.06 ± 0.01

0.72 ± 0.11

58.1 ± 4.2

8.30E-67

3.86E-43

9.89E-28

27.82

L2

1,764

1,007.7 ± 560.1

0.05 ± 0.01

0.64 ± 0.11

55.0 ± 5.2

3.88E-31

2.65E-16

3.32E-10

34.15

L3

4,050

807.2 ± 374.0

0.04 ± 0.01

0.61 ± 0.08

53.1 ± 4.5

7.05E-17

3.52E-11

1.19E-08

26.29

L4

716

997.4 ± 501.5

0.05 ± 0.01

0.64 ± 0.09

55.1 ± 5.1

9.21E-32

1.69E-16

4.21E-10

34.40

NG

24,644

924.4 ± 502.7

0.05 ± 0.01

0.64 ± 0.10

53.2 ± 5.0

4.28E-23

1.84E-13

1.88E-09

17.43

  1. *See text for a description of the different classes.
  2. Co-location of the CpG islands predicted by the program CpGProD and genes in human (hg17) and mouse (mm5) genomes.