Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice

Table 3 The 20 longest duplicated segments in the rice genome

Colinear gene number	Gene orientation identity	Epv	Segment A in rice				Segment B in rice
			Starting gene	Ending gene	Gene number	Length (Mb)	Starting gene	Ending gene	Gene number	Length (Mb)
194	0	0.95	11_5	11_700	695	4.11	12_73	12_691	618	3.73
191	0	0.95	2_3549	2_4505	956	6.18	4_3002	4_4139	1137	7.03
157	0	0.94	1_5264	1_3976	1288	8.42	5_3767	5_4423	656	3.85
139	0	0.97	1_6225	1_5317	908	5.68	5_2981	5_3719	738	4.50
126	3.65E-296	0.90	8_3168	8_4097	929	5.92	9_1944	9_2863	919	5.73
122	8.23E-286	0.89	3_2952	3_1610	1342	9.01	7_3177	7_4010	833	5.10
110	3.85E-257	0.94	2_5335	2_4716	619	3.94	6_682	6_1503	821	5.59
88	5.33E-191	0.95	2_2758	2_3516	758	5.07	4_2121	4_2941	820	5.56
59	2.57E-112	0.83	3_5355	3_5625	270	1.61	7_335	7_910	575	3.87
41	1.81E-067	0.98	1_743	1_1160	417	2.97	5_701	5_1067	366	2.75
40	4.49E-072	0.95	2_896	2_661	235	1.54	6_3717	6_4079	362	2.57
34	4.97E-054	0.97	3_3955	3_4295	340	2.28	12_2686	12_2997	311	2.08
33	1.83E-059	0.94	2_643	2_310	333	2.22	6_4127	6_4386	259	1.64
32	1.30E-051	0.94	2_1059	2_907	152	1.05	6_3325	6_3648	323	2.39
30	8.41E-049	0.90	2_1361	2_1112	249	1.76	6_2904	6_3209	305	2.18
23	1.49E-036	0.96	3_661	3_561	100	0.59	10_1721	10_1879	158	1.16
22	5.24E-030	1.00	1_6600	1_6816	216	1.30	5_2616	5_2780	164	1.15
22	9.83E-031	0.95	8_2936	8_3126	190	1.40	9_1646	9_1894	248	1.80
21	3.50E-038	0.95	1_581	1_724	143	0.74	5_559	5_644	85	0.56
21	3.23E-030	0.81	3_5157	3_5293	136	0.92	7_71	7_279	208	1.32

ISSN: 1471-2105