Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice

Table 4 The 20 longest collinear regions between the Arabidopsis and rice genome

Colinear gene number	Gene orientation identity	epv	Segment in Arabidopsis				Segments in rice
			Starting gene	Ending gene	Gene number	Length (Mb)	Starting gene	Ending gene	Gene number	Length (Mb)
14	0.93	5.53E-16	4_3648	4_3741	93	0.61	2_3736	2_3815	79	0.32
11	0.64	1.45E-09	2_5222	2_5287	65	0.38	4_2954	4_3026	72	0.26
11	0.91	2.69E-10	4_2502	4_2430	72	0.46	2_2835	2_2883	48	0.19
10	0.60	1.37E-07	7_562	7_658	96	0.64	3_2215	3_2280	65	0.24
10	0.70	9.51E-08	10_3103	10_3021	82	0.54	2_3733	2_3781	48	0.19
10	0.70	3.61E-09	1_5674	1_5595	79	0.51	2_3286	2_3339	53	0.18
10	0.90	4.37E-10	8_3510	8_3590	80	0.42	5_4866	5_4931	65	0.23
9	0.78	7.81E-07	3_1660	3_1736	76	0.48	2_2221	2_2248	27	0.12
9	0.89	3.63E-07	2_4713	2_4635	78	0.41	5_4870	5_4948	78	0.29
9	0.56	4.60E-08	9_2767	9_2822	55	0.31	4_3435	4_3468	33	0.12
9	0.89	1.44E-08	7_3347	7_3305	42	0.28	1_5880	1_5908	28	0.10
9	1.00	4.51E-10	1_5843	1_5889	46	0.31	3_4249	3_4279	30	0.10
8	0.75	1.32E-05	5_3294	5_3386	92	0.56	5_104	5_198	94	0.29
8	0.75	6.45E-05	6_1100	6_1031	69	0.54	5_5811	5_5863	52	0.21
8	0.75	6.08E-05	7_3242	7_3189	53	0.32	5_5408	5_5441	33	0.12
8	0.75	4.70E-05	4_2502	4_2430	72	0.46	3_4109	3_4154	45	0.16
8	0.75	3.60E-05	4_3665	4_3741	76	0.50	3_4887	3_4952	65	0.23
8	0.63	2.24E-05	6_772	6_682	90	0.57	4_3081	4_3144	63	0.21
8	0.63	1.25E-05	4_2498	4_2425	73	0.49	2_1946	2_2009	63	0.19
8	0.63	1.12E-05	1_5796	1_5720	76	0.43	5_128	5_207	79	0.25

ISSN: 1471-2105