SVRMHC prediction server for MHC-binding peptides

BMC Bioinformatics

Table 2 The list of class II MHC alleles for which SVRMHC models have been constructed.

MHC allele	Linear, 11-factor	Linear, Sparse	Polynomial, 11-factor	Polynomial, Sparse	RBF, 11-factor	RBF, Sparse
DRB1*0401	0.526	0.556	0.551	0.612	0.582	0.61
DRB1*0101	0.531	0.5	0.568	0.616	0.634	0.61
DRB1*1501	0.659	0.622	0.703	0.693	0.7078	0.671
DQA1*0501	0.456	0.568	0.529	0.581	0.546	0.537
DRB1*0405	0.249	0.48	0.364	0.415	0.295	0.412
DRB5*0101	0.408	0.479	0.391	0.589	0.374	0.532

The table also includes statistics of performance for the models (expressed in cross-validated r) for various configurations of parameters. The configurations offering the best performance are marked in bold, and these are the models implemented in the SVRMHC server.

ISSN: 1471-2105