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Figure 5 | BMC Bioinformatics

Figure 5

From: CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes

Figure 5

AlignmentViewer display of the Helicobacter pylori data. (A) The same example as that shown in Figure 3. Each gene is colored according to the codon usage bias with respect to the average of all genes, as introduced by Karlin et al. [43]. The highest bias is colored red, while the lowest bias is colored blue. (B) Similar to (A), except that each gene is colored according to the G+C content at the third codon position. The highest G+C content is colored red, while the lowest G+C content is colored blue. (C) ORF disruption caused by expansion of a simple repeat. The window size is 5000 bp. (D) Similar to (C), except using the window size of 50 bp.

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BMC Bioinformatics

ISSN: 1471-2105

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