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Figure 8 | BMC Bioinformatics

Figure 8

From: CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes

Figure 8

Examples of differences between alignment engines. Alignment of the same regions of H. pylori strains 26695 and J99, as calculated by BLASTN (A and C) and BLASTZ (B and D). In (A) and (B), each alignment is colored according to percentage identity, so that 100% is colored green, 85% is colored yellow, 50% is colored red, and the remaining identities are interpolated between these colors. In (C) and (D), the actual sequence alignment in this region is displayed with colors assigned to each character as follows: white, match; red, mismatch; green, gap.

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BMC Bioinformatics

ISSN: 1471-2105

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