Table 1 Median (lower and upper quartiles) of the -log(p)-values with different residue scoring schema together with the MD and IC scores.
From: A statistical score for assessing the quality of multiple sequence alignments
Score | Box11 | Box12 | Box22 | Box23 | Box33 |
|---|---|---|---|---|---|
LogP Blosum62 | 708 (708, 708) | 611 (198, 708) | 208 (161, 547) | 120 (99, 177) | 75 (47, 123) |
LogP Gonnet | 708 (708, 708) | 190 (164, 708) | 158 (131, 189) | 98 (78, 136) | 64 (56, 106) |
LogP Indep | 708 (708, 708) | 202 (158, 708) | 171 (108, 202) | 75 (63, 113) | 57 (35, 96) |
LogP PAM | 708 (212, 708) | 201 (166, 708) | 153 (125, 201) | 94 (81, 133) | 66 (56, 105) |
LogP 6 groups | 644 (631, 683) | 312 (300, 333) | 279 (241, 341) | 216 (77, 240) | 43 (26, 91) |
MD | 92 (86, 97) | 43 (29, 55) | 34 (24, 42) | 24 (19, 31) | 20 (15, 25) |
IC | 57 (55, 59) | 39 (34, 48) | 31 (27, 35) | 21 (19, 23) | 13 (10, 19) |