Table 2 The alignment programs which obtained the highest AQ, SP and CS scores in different reference sets.
From: A statistical score for assessing the quality of multiple sequence alignments
| Â | Top Programs | ||
|---|---|---|---|
Reference set | AQ | SP | CS |
11 | Probcons, L-INS-i, Muscle | ProbCons | ProbCons, L-INS-i |
12 | Probcons, Muscle, L-INS-i, Tcoffee | ProbCons | ProbCons |
20 | L-INS-i, Clustal, Muscle, Tcoffee | ProbCons | ProbCons, L-INS-i |
30 | L-INS-i, Clustal, TCoffee, FFT-NS-2, Muscle, Probcons | L-INS-i, Probcons, Muscle, TCoffee | L-INS-i, Probcons, TCoffee, Muscle |
40 | L-INS-i, TCoffee | L-INS-i, Probcons, TCoffee | L-INS-i, TCoffee, Probcons |
50 | L-INS-i, TCoffee, Probcons, Muscle, FFT-NS-2, Clustal | TCoffee, Probcons, L-INS-i | L-INS-i, TCoffee, Probcons, Muscle |