Table 6 Comparison of experimental SAGE-tags assignments
From: Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression
Varela [17] | Velculescu [15] | Kal [16] | ||||
|---|---|---|---|---|---|---|
Frequency | Percentage | Frequency | Percentage | Frequency | Percentage | |
Assignments performed by the authors | ||||||
Single assignment | 1,067 | 83.82 | 2,491 | 83.01 | 1,074 | 81.30 |
Multiple assignments | 206 | 16.18 | 510 | 16.99 | 247 | 18.70 |
Assignments performed by the HGA-based annotation | ||||||
Single assignment | 1,177 | 92.46 | 2,756 | 91.84 | 1,204 | 91.14 |
Multiple assignments | 96 | 7.54 | 245 | 8.16 | 117 | 8.86 |
Gain of unambiguous assignments by the HGA-based annotation | ||||||
Gain | 110 | 8.64 | 265 | 8.83 | 130 | 9.84 |
Conflicting assignments (between other authors and the HGA-based annotation) | ||||||
Class High | 69 | 5.42 | 154 | 5.13 | 115 | 8.71 |
Class Platinum | 41 | 3.22 | 90 | 3.00 | 36 | 2.73 |
Class Copper | 28 | 2.20 | 64 | 2.13 | 79 | 5.98 |
Total number of assignments | ||||||
Total | 1,273 | 100.00 | 3,001 | 100.00 | 1,321 | 100.00 |