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Table 1 Comparison on the performance of various algorithms on the SH3 dataset

From: A correlated motif approach for finding short linear motifs from protein interaction networks

Algorithm

PxxP

PxxPx[KR]

[KR]xxPxxP

D-STAR

1st

1st

8th

S-STAR

1st

-

-

MEME

1st

-

-

GIBBS

3rd

3rd

-

  1. Rank of sequence segment sets or sequence segment pair sets output by the various algorithms that express various known binding motifs of SH3 domains. "-" denote the biological motif is not expressed within the top 50 sequence segment sets.
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BMC Bioinformatics

ISSN: 1471-2105

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