BMC Bioinformatics

Table 7 Average quality scores of PREFAB

From: Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost

	Main		Weighting		Long gap
	QS	Ranksum	QS	Ranksum	QS	Ranksum
PRIME_piecewise	0.721	8151	0.649	588	0.658	1408
PRIME_affine	0.718	8355	0.637	617	0.651	1504
Prrn	0.722	8120	0.624	621	0.653	1455
MAFFT	0.722	7744	0.639	585	0.660	1352
ProbCons	0.705	8659	0.620	594	0.637	1443
T-Coffee	0.700	9126	0.627	584	0.631	1640
MUSCLE	0.680	10446	0.607	642	0.596	1918
DIALIGN-T	0.621	13277	0.587	754	0.541	2506
POA	0.603	14662	0.554	868	0.513	2789
ClustalW	0.617	12952	0.603	650	0.519	2583
PSA_piecewise	0.591	14525	0.638	627	0.498	2804
PSA_affine	0.581	14789	0.621	670	0.489	2856

Each QS and Ranksum columns show the average quality scores and the rank sum of the Friedman test using quality scores on all alignments of each reference set, respectively. A smaller rank sum means better accuracy.

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ISSN: 1471-2105

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