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Table 8 Computation time

From: Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost

 

BAliBASE

PREFAB

PRIME piecewise

9.4 × 105

5.5 × 105

PRIME affine

4.9 × 105

4.3 × 105

Prrn

6.8 × 105

1.9 × 105

MAFFT

1.9 × 104

2.7 × 104

ProbCons

6.4 × 104

1.9 × 105

T-Coffee

7.2 × 105

2.0 × 106

MUSCLE

7.9 × 103

1.6 × 104

DIALIGN-T

3.0 × 104

1.2 × 105

POA

1.0 × 104

2.6 × 104

ClustalW

8.3 × 103

2.7 × 104

  1. BAliBASE column shows total times (sec.) of constructing all alignments of the full length and homologous region sets by each program, while PREFAB column, those of calculating whole alignments of the main and weighting sets only.
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BMC Bioinformatics

ISSN: 1471-2105

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