Table 2 Examples of topic-GO associations
From: Identifying biological concepts from a protein-related corpus with a probabilistic topic model
Topic # | GO ID | MI | GO Category | GO Term | Most Frequent Topic Words |
|---|---|---|---|---|---|
278 | GO:0005730 | 0.001439 | Component | nucleolus | ribosom rrna pre deplet process small nucleolar biogenesi accumul nucleolu |
267 | GO:0005681 | 0.001193 | Component | spliceosome complex | splice altern pre snrnp mrna spliceosom u2 step sap snrna |
105 | GO:0005816 | 0.00119 | Component | spindle pole body | microtubul spindl mitot tubulin kinetochor mitosi centrosom pole centromer bodi |
236 | GO:0006935 | 0.00186 | Process | chemotaxis | lymphocyt macrophag chemokin monocyt neutrophil inflammatori leukocyt peripher mcp cd8 |
156 | GO:0006468 | 0.001514 | Process | protein amino acid phosphorylation | kinas phosphoryl serin threonin pkc autophosphoryl casein akt catalyt ste20 |
267 | GO:0000398 | 0.001404 | Process | nuclear mRNA splicing | splice altern pre snrnp mrna spliceosom u2 step sap snrna |
156 | GO:0004674 | 0.001148 | Function | protein serine/threonine kinase activity | kinas phosphoryl serin threonin pkc autophosphoryl casein akt catalyt ste20 |
267 | GO:0008248 | 0.001463 | Function | pre-mRNA splicing factor activity | splice altern pre snrnp mrna spliceosom u2 step sap snrna |
236 | GO:0008009 | 0.001093 | Function | chemokine activity | lymphocyt macrophag chemokin monocyt neutrophil inflammatori leukocyt peripher mcp cd8 |
224 | GO:0015671 | 5.05E-06 | Process | oxygen transport | ha uniqu characterist featur extens character typic possess unusu exhibit |
227 | GO:0015213 | 5.00E-06 | Function | uridine transporter activity | function defin unknown perform wide thei tissu repres consist creat |