Query Term | Query Type | Proteins | Nucleic Acid Sequences | Protein Families | Structures | Interactions | Pathways | Total | Connected |
|---|
autoimmune | protein | 58 | 324 | 1 | 0 | 4 | 0 | 387 | 111 |
| Â | nucleic | 58 | 369 | 0 | 0 | 0 | 0 | 427 | 150 |
cancer | protein | 830 | 37023 | 7 | 5 | 109 | 0 | 37974 | 1977 |
| Â | nucleic | 829 | 37300 | 0 | 1 | 1 | 0 | 38131 | 1920 |
stromelysin | protein | 46 | 566 | 3 | 2 | 0 | 0 | 617 | 76 |
ubiquitin | protein | 2372 | 28820 | 9 | 25 | 720 | 1 | 31947 | 6219 |
- For each query we list the number of instances of each Biozon data type included in the corresponding focused subgraph. The query types we experimented with are protein sequence and nucleic sequence. One might be surprised by the fact that a structure is included in the focused subgraph for the stromelysin-nucleic search since protein structures are not directly related to nucleic acid sequences. Such nodes are included by definition since they have the search term; however, they are ignored (along with all other nodes that do not have neighbors) in the subsequent eigencalculations and are assigned prominence values of 0. The 'Total' column indicates the number of nodes included in the focused subgraph, while the last column ('Connected') lists the number of nodes of the focused subgraph with at least one neighbor in the subgraph. Only nodes which have neighbors are included in our computations.
