Sample and Data
|
Stage
|
p-value < 10-2
|
p-value < 10-4
|
p-value < 10-6
|
Total
|
---|
| |
Count
|
Percent
|
Count
|
Percent
|
Count
|
Percent
|
Count
|
90 normal samples (autosomes)
|
SP
|
409049
|
5.05%
|
42182
|
0.52%
|
11154
|
0.14%
|
8095770
|
|
KS
|
40247
|
0.497%
|
3302
|
0.041%
|
770
|
0.009%
|
8095770
|
|
TR
|
5417
|
0.067%
|
506
|
0.006%
|
167
|
0.002%
|
8095770
|
1X
|
SP
|
1441
|
73.71%
|
694
|
35.50%
|
286
|
14.63%
|
1955
|
|
KS
|
1780
|
91.05%
|
714
|
36.52%
|
111
|
5.68%
|
1955
|
|
TR
|
p-value = 1.99 × 10-4
|
1955
|
3X
|
SP
|
1271
|
65.01%
|
879
|
44.96%
|
603
|
30.84%
|
1955
|
|
KS
|
1707
|
87.31%
|
1136
|
58.11%
|
547
|
27.98%
|
1955
|
|
TR
|
p-value = 8.13 × 10-6
|
1955
|
4X
|
SP
|
1726
|
88.29%
|
1523
|
77.90%
|
1343
|
68.70%
|
1955
|
|
KS
|
1929
|
98.67%
|
1861
|
95.19%
|
1697
|
86.80%
|
1955
|
|
TR
|
p-value = 6.15 × 10-12
|
1955
|
5X
|
SP
|
1884
|
96.37%
|
1801
|
92.12%
|
1724
|
88.18%
|
1955
|
|
KS
|
1950
|
99.74%
|
1933
|
98.87%
|
1907
|
97.54%
|
1955
|
|
TR
|
p-value = 1.50 × 10-16
|
1955
|
- Notes:
- 1 SP: Single point analysis
- 2 KS: Kernel smoothing with 100 kb window after single point analysis
- 3 TR: Tree partitioning of the genome on the kernel smoothed result.