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Table 1 SIMMAP summary statistics

From: SIMMAP: Stochastic character mapping of discrete traits on phylogenies

Data Type

Statistic

Output*

Nucleotide

E [i → j]

1,2

 

E[transition]

1,2

 

E[transversion]

1,2

 

E[time]

1,2

 

E[subs/branch]

1

Codon

E[i → j]

1,2

 

E[synonymous]

1,2

 

E[non-synonymous]

1,2

 

E[time]

1,2

 

E[conservative]

1,2

 

E[radical]

1,2

 

E[AA i → AA j ]

1,2

 

E[Δhydropathy]

1,2

Standard (Morphology)

E [i → j]

1,2

 

E[time]

1,2

 

E[bias]

1,2

 

E[rate]

1,2

  1. * Statistics can be displayed on screen (1) or saved to a file (2). Values reported are the posterior expectations.
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BMC Bioinformatics

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