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Table 1 Marginal versus joint reconstruction

From: Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding proteins

posterior probability

joint = marginal 1

joint ≠ marginal 1

  

marginal 2

marginal 3

marginal 4

marginal 5–20

1 – 10%

1,238

181

122

112

401

11 – 20%

75,322

16,354

10,065

6,285

11,801

21 – 30%

261,119

66,689

31,945

13,920

11,556

31 – 40%

462,681

116,133

37,273

8,923

4,508

41 – 50%

645,994

146,765

19,181

3,320

1,587

51 – 60%

823,937

146,931

7,127

1,207

522

61 – 70%

759,976

57,359

2,576

414

158

71 – 80%

789,136

18,078

799

124

66

81 – 90%

1,007,528

4,057

215

30

5

91 – 100%

20,433,891

431

24

3

3

 

25,260,822

572,978

109,327

34,338

30,607

  1. All reconstructed sites are cross-tabulated according to the posterior probability of the best marginal reconstruction amino acid and the marginal reconstruction rank, from highest to lowest posterior probability, of the sole joint reconstruction amino acid.