Skip to main content

Table 3 Different experimental setups and their performance

From: A classification-based framework for predicting and analyzing gene regulatory response

Experiment

Motif data

Parents

Targets

Error on ESR

Error on DNA damage

ChIP+all

ChIP

475 SM+TF

6102

17.29%

23.56%

ChIP+SM

ChIP

250 SM

6102

16.7%

23.33%

Pilpel+all

Pilpel motifs

475 SM+TF

5579

12.7%

18.87%

Pilpel+TF

Pilpel motifs

237 TF

5579

13.7%

20.34%

Pilpel+SM

Pilpel motifs

250 SM

5579

14.11%

19.58%