Table 2 Over and under-represented sites in in TNFα expression data. Predicted sites that are significantly over-represented (Ratio [FC>2.0] > 1.4) and under-represented (Ratio [FC>2.0] < 0.7) in the promoters of genes that are differentially expressed in primary human endothelial cells upon TNFα stimulation
From: Beyond microarrays: Finding key transcription factors controlling signal transduction pathways
Matrix ID in TRANSFAC® | Ratio [FC>2.0] | #sites k | #sites m | p-value | Ratio [FC>2.5] | Ratio [FC>3.0] |
|---|---|---|---|---|---|---|
V$NFKAPPAB65_01 | 5.54 | 36 | 7 | 1.45·10-6 | 10.44 | 12.49 |
V$CREL_01 | 3.29 | 58 | 19 | 1.04·10-6 | 4.83 | 5.52 |
V$CDX2_Q5 | 2.45 | 41 | 18 | 7.35·10-4 | 2.90 | 2.74 |
V$IRF_Q6 | 1.88 | 68 | 39 | 9.46·10-4 | - | - |
V$AP1_01 | 2.09 | 35 | 18 | 6.51·10-3 | 2.55 | 2.78 |
V$FOXJ2_02 | 1.58 | 94 | 64 | 2.70·10-3 | 1.61 | 1.78 |
V$MAZ_Q6 | 1.45 | 284 | 211 | 2.32·10-5 | - | - |
V$GATA4_Q3 | 1.58 | 139 | 95 | 3.50·10-4 | 2.54 | 2.69 |
V$CETS1P54_01 | 0.20 | 6 | 32 | 3.19·10-5 | 0.38 | 0.50 |
V$YY1_02 | 0.30 | 12 | 43 | 5.21·10-5 | 0.25 | - |
V$USF_02 | 0.38 | 18 | 50 | 2.15·10-4 | 0.36 | 0.39 |
V$CREBATF_Q6 | 0.61 | 65 | 114 | 9.35·10-4 | - | - |
V$E2F_Q3_01 | 0.63 | 88 | 149 | 4.13·10-4 | 0.36 | 0.28 |
V$MYC_Q2 | 0.64 | 87 | 145 | 7.05·10-4 | 0.45 | 0.50 |