Table 1 Gene Ontology Enrichment of Informative motifs
From: Bioinformatics analysis of the early inflammatory response in a rat thermal injury model
Process Name | Motif 1 | Motif 2 | Motif 3 | Motif 4 |
|---|---|---|---|---|
protein biosynthesis | 0.000 | 0.082 | 0.568 | 1.000 |
ribosome biogenesis | 0.000 | 0.314 | 1.000 | 1.000 |
response to unfolded protein | 0.003 | 0.268 | 1.000 | 1.000 |
protein folding | 0.004 | 0.178 | 1.000 | 1.000 |
peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 0.015 | 1.000 | 1.000 | 1.000 |
protein-nucleus export | 0.023 | 1.000 | 1.000 | 1.000 |
adenine metabolism | 0.023 | 1.000 | 1.000 | 1.000 |
response to stress | 0.023 | 1.000 | 1.000 | 1.000 |
pyridoxine biosynthesis | 0.030 | 1.000 | 1.000 | 1.000 |
endothelial cell differentiation | 0.030 | 1.000 | 1.000 | 1.000 |
hormone-mediated signaling | 0.038 | 1.000 | 1.000 | 1.000 |
re-entry into mitotic cell cycle | 0.045 | 1.000 | 1.000 | 1.000 |
protein amino acid prenylation | 0.045 | 1.000 | 1.000 | 1.000 |
transmission of nerve impulse | 0.045 | 1.000 | 1.000 | 1.000 |
negative regulation of calcium-mediated signaling | 1.000 | 0.000 | 1.000 | 1.000 |
Acute phase response genes | 1.000 | 0.000 | 1.000 | 1.000 |
ubiquitin-dependent protein catabolism | 0.288 | 0.001 | 0.284 | 1.000 |
ureteric bud development | 1.000 | 0.005 | 1.000 | 1.000 |
nucleosome assembly | 1.000 | 0.013 | 0.128 | 1.000 |
protein catabolism | 1.000 | 0.015 | 1.000 | 1.000 |
homophilic cell adhesion | 0.149 | 0.017 | 1.000 | 0.143 |
norepinephrine biosynthesis | 1.000 | 0.018 | 1.000 | 1.000 |
protein refolding | 1.000 | 0.027 | 1.000 | 1.000 |
chaperone cofactor dependent protein folding | 1.000 | 0.027 | 1.000 | 1.000 |
N-acetylglucosamine metabolism | 1.000 | 0.036 | 1.000 | 1.000 |
thyroid hormone catabolism | 1.000 | 0.036 | 1.000 | 1.000 |
cellular response to starvation | 1.000 | 1.000 | 0.000 | 1.000 |
negative regulation of Ras protein signal transduction | 1.000 | 1.000 | 0.000 | 1.000 |
RNA processing | 1.000 | 1.000 | 0.001 | 1.000 |
cell glucose homeostasis | 1.000 | 1.000 | 0.002 | 1.000 |
protein amino acid dephosphorylation | 0.436 | 0.494 | 0.003 | 0.421 |
cytokinesis | 1.000 | 1.000 | 0.003 | 1.000 |
nucleocytoplasmic transport | 1.000 | 1.000 | 0.005 | 1.000 |
negative regulation of transcription, DNA-dependent | 0.116 | 1.000 | 0.007 | 1.000 |
somitogenesis | 1.000 | 1.000 | 0.015 | 1.000 |
glycogen metabolism | 1.000 | 1.000 | 0.015 | 1.000 |
thioredoxin pathway | 1.000 | 1.000 | 0.023 | 1.000 |
negative regulation of Wnt receptor signaling pathway | 1.000 | 1.000 | 0.023 | Â |
negative regulation of neuron differentiation | 1.000 | 1.000 | 0.023 | 1.000 |
frizzled signaling pathway | 1.000 | 1.000 | 0.030 | 1.000 |
tRNA processing | 1.000 | 1.000 | 0.030 | 1.000 |
regulation of Wnt receptor signaling pathway | 1.000 | 1.000 | 0.030 | 1.000 |
interleukin-2 biosynthesis | 1.000 | 1.000 | 0.030 | 1.000 |
RNA-nucleus export | 1.000 | 1.000 | 0.037 | 1.000 |
Golgi organization and biogenesis | 1.000 | 1.000 | 0.037 | 1.000 |
regulation of transcription, DNA-dependent | 0.077 | 0.166 | 0.040 | 1.000 |
grooming behavior | 1.000 | 1.000 | 1.000 | 0.015 |
medium-chain fatty acid transport | 1.000 | 1.000 | 1.000 | 0.022 |
embryonic placenta development | 1.000 | 1.000 | 1.000 | 0.022 |
catecholamine catabolism | 1.000 | 1.000 | 1.000 | 0.022 |
inflammatory response | 0.494 | 1.000 | 1.000 | 0.028 |
inflammatory response | 0.494 | 1.000 | 1.000 | 0.028 |
embryo implantation | 1.000 | 1.000 | 1.000 | 0.029 |
synaptic vesicle endocytosis | 1.000 | 1.000 | 1.000 | 0.029 |
response to acid | 1.000 | 1.000 | 1.000 | 0.036 |
associative learning | 1.000 | 1.000 | 1.000 | 0.036 |
nitrogen fixation | 1.000 | 1.000 | 1.000 | 0.036 |
regulation of dopamine metabolism | 1.000 | 1.000 | 1.000 | 0.036 |
mesoderm cell differentiation | 1.000 | 1.000 | 1.000 | 0.036 |
regulation of transcription | 1.000 | 1.000 | 1.000 | 0.038 |
vasculogenesis | 1.000 | 1.000 | 1.000 | 0.043 |
fatty acid transport | 1.000 | 1.000 | 1.000 | 0.043 |