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Table 2 CPU usage for geometric test set.

From: ASH structure alignment package: Sensitivity and selectivity in domain classification

Program CPU (s) CPU/Align Rel. to FAST Align Missing
Dali 12895 6.2 20 121
SRUCTAL 3703 1.8 5 0
GASH 3197 1.5 5 4
RASH 1424 .69 2 0
FAST 645 .31 1 3
  1. The total CPU usage for 5 programs was computed over the geometric test set of 2,071 query-template pairs. The last column lists the number of query-template pairs for which no alignment was obtained by the method.
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BMC Bioinformatics

ISSN: 1471-2105

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