Table 2 Test data set analysis.
From: RepSeq – A database of amino acid repeats present in lower eukaryotic pathogens
2+ SRRs | 3+ SRRs | ||||||
|---|---|---|---|---|---|---|---|
Loose Repeat Threshold | Loose Repeat Threshold | ||||||
Total Proteins | SRR Proteins | Total | True positives | False positives | Total | True positives | False positives |
5000 | 250 | 342 | 250 (100%) | 92 | 248 | 248 (99.2%) | 0 |
5000 | 1250 | 1306 | 1250 (100%) | 56 | 1237 | 1237 (99.0%) | 0 |
10000 | 500 | 674 | 500 (100%) | 174 | 492 | 492 (98.4%) | 0 |
10000 | 2500 | 2633 | 2500 (100%) | 133 | 2466 | 2466 (98.6%) | 0 |
Normal Repeat Threshold | Normal Repeat Threshold | ||||||
Total Proteins | SRR Proteins | Total | True positives | False positives | Total | True positives | False positives |
5000 | 250 | 256 | 250 (100%) | 6 | 248 | 248 (99.2%) | 0 |
5000 | 1250 | 1253 | 1248 (99.8%) | 5 | 1237 | 1237 (99.0%) | 0 |
10000 | 500 | 506 | 499 (99.8 %) | 7 | 492 | 492 (98.4%) | 0 |
10000 | 2500 | 2504 | 2496 (99.8%) | 8 | 2466 | 2466 (98.6%) | 0 |
Strict Repeat Threshold | Strict Repeat Threshold | ||||||
Total Proteins | SRR Proteins | Total | True positives | False positives | Total | True positives | False positives |
5000 | 250 | 245 | 245 (98.0%) | 0 | 244 | 244 (97.6%) | 0 |
5000 | 1250 | 1220 | 1220 (97.6%) | 0 | 1219 | 1219 (97.5%) | 0 |
10000 | 500 | 485 | 485 (97.0%) | 0 | 484 | 484 (96.8%) | 0 |
10000 | 2500 | 2424 | 2424 (97.0%) | 0 | 2420 | 2420 (96.8%) | 0 |