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Table 5 Average, minimum, maximum run times (in seconds) and memory (in megabytes) requirement results of proposed probabilistic alignment constraint (New constraint) and the previously employed M constraint.

From: Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign

   tRNA 5S RNA
New constraint M constraint New constraint M constraint
Memory avg 10.988 10.960 12.377 14.306
  min 9.36 10.528 10.176 12.664
  max 13.592 12.040 17.436 14.840
Timing avg 9.98 9.39 34.38 73.07
  min 1.0 4.0 20.0 36.0
  max 55.0 29.0 234.0 111.0
  1. A dual-core AMD Opteron®-270 2.0 GHz system with 4 GBytes of main memory running Linux Fedora Core 4 was utilized for the timing experiments.