Table 5 Average, minimum, maximum run times (in seconds) and memory (in megabytes) requirement results of proposed probabilistic alignment constraint (New constraint) and the previously employed M constraint.
From: Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
| Â | Â | tRNA | 5S RNA | ||
|---|---|---|---|---|---|
New constraint | M constraint | New constraint | M constraint | ||
Memory | avg | 10.988 | 10.960 | 12.377 | 14.306 |
| Â | min | 9.36 | 10.528 | 10.176 | 12.664 |
| Â | max | 13.592 | 12.040 | 17.436 | 14.840 |
Timing | avg | 9.98 | 9.39 | 34.38 | 73.07 |
| Â | min | 1.0 | 4.0 | 20.0 | 36.0 |
| Â | max | 55.0 | 29.0 | 234.0 | 111.0 |