Toward the automated generation of genome-scale metabolic networks in the SEED

BMC Bioinformatics

Table 2 Regenerated S. aureus network

Total Reactions	812
*Reaction Categories*
Reactions Automatically assembled from Subsystems	518
Reactions Added "As is" from iSB619 Model^a	33
Conversion Reactions^b	24
Transport Reactions from iSB619 Model	93
Exchange Reactions for Transported Compounds	144

^a. Reactions in iSB619 model that could not be mapped to KEGG reactions (see Methods).
^b. Reactions to convert model compound IDs to KEGG compound IDs.

ISSN: 1471-2105