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Table 1 Occurrence of monocyte specific clusters in patient groups.

From: Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation

 

Patient groups

Cluster descriptions

3

4

5

6

7

8

9

10

12

13

16

MHC 2

-

-

4↑

13↓

9↓

-

3↑

-

7↓

4↑

-

Cathepsins

-

11↓

9↑

-

3↓

-

-

4↓

3*

3↓

-

NADPH oxidase/respiratory burst

-

-

4↑

-

4↓

-

6↑

-

-

-

-

Gene names

3

4

5

6

7

8

9

10

12

13

16

CCR1

↓

↓

↑

-

-

-

↑

-

-

-

-

CCR2

↓

-

↑

-

-

-

↑

-

-

-

-

CD14

-

-

↑

-

-

-

↑

-

-

-

-

LILRB4

-

-

↑

-

-

-

-

-

-

-

↑

  1. * The cathepsins of group 12 include 1 down-regulated and 2 up-regulated genes.
  2. The upper half of the table shows for the patient groups the presence of the clusters of genes that were discussed for patient group 5. Several patient groups are not shown as the SAM analysis only yielded very few distinguishing genes. The size of the clusters is indicated and the arrows indicate if the genes are up- or down regulated. The lower half of the table shows the presence of the genes that were discussed in the text.
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BMC Bioinformatics

ISSN: 1471-2105

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