Skip to main content

Table 1 The number of unique markers and the average density of 10-mer ~ 26-mer subsequences in the database of HGI and RGI.

From: Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis

N-mer

HGI a

RGI b

 

Unique Markers

Average U d c

Unique Markers

Average U d

10-mer

0

0.000000

4

0.000000

11-mer

6

0.000000

9,669

0.000120

12-mer

24,164

0.000054

457,681

0.005675

13-mer

1,124,491

0.002513

4,167,009

0.051672

14-mer

9,488,257

0.021202

15,364,798

0.190527

15-mer

35,768,666

0.079925

27,962,463

0.346742

16-mer

66,958,259

0.149618

34,903,375

0.432811

17-mer

85,694,125

0.191484

37,636,118

0.466698

18-mer

94,052,393

0.210160

38,645,904

0.479219

19-mer

97,689,916

0.218288

39,061,604

0.484374

20-mer

99,559,386

0.222466

39,276,816

0.487043

21-mer

100,781,233

0.225196

39,417,681

0.488789

22-mer

101,743,851

0.227347

39,522,956

0.490095

23-mer

102,583,079

0.229222

39,608,919

0.491161

24-mer

103,348,039

0.230931

39,682,141

0.492069

25-mer

104,057,929

0.232518

39,744,826

0.492846

26-mer

104,724,128

0.234006

39,800,164

0.493532

  1. aHGI, human gene index; bRGI, rat gene index; cU d , the density of the unique subsequences.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us