Table 1 Computation time comparison
From: 160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Number of cells | Pure software (ms) | 1×SCM (ms) | 64×SCM (ms) |
|---|---|---|---|
1 | 0.0244 | 0.0106 | 0.0141 |
4 | 0.0432 | 0.0194 | 0.0135 |
16 | 0.120 | 0.0568 | 0.0124 |
64 | 0.400 | 0.204 | 0.0128 |
256 | 1.55 | 0.809 | 0.0233 |
1024 | 6.57 | 3.45 | 0.0591 |
4096 | 26.2 | 14. 5 | 0.193 |
16384 | 107 | 58.3 | 0.687 |
262144 | 1919 | 1126 | 11.3 |
1048576 | 7719 | 4504 | 42.8 |