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Table 1 Classification of the binding targets of a TF into plausible and non-plausible regulatory ones. The numbers of genes in B+, B+R+ and B+R- are shown for each of the nine cell cycle TFs under study. B+R+ is further divided into two subsets depending on whether the gene's expression profile is positively (TlC > 0) or negatively (TlC < 0) correlated with the TF's regulatory profile, possibly with time lags (see Additional file 1 for details).

From: Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data

TF

B +

B+R+ (TlC > 0, TlC < 0)

B + R -

Abf1

247

144 (85,59)

103

Ace2

81

44 (23,21)

37

Cin5

142

69 (35,34)

73

Fkh1

133

96 (62,34)

37

Fkh2

116

90 (60,30)

26

Rap1

147

82 (61,21)

65

Swi4

146

84 (66,18)

62

Swi5

106

42 (32,10)

64

Swi6

144

49 (25,24)

95