Table 1 The tRNA sequences in the test data set. Reference alignment showing the reference structures and the ideal consensus structure (bottom). Quotes indicate non-canonical basepairs. The number of nucleotides and of basepairs is given for each sequence and structure.
ID & Species | Sequence & Structure | Length | ID |
|---|---|---|---|
RD0260 | GCGACCGGGGCUGGCUU-GGUA-AUGGUACUCCCCUGUCACGGGAGAG---------------AAUGUGGGUUCAAAUCCCAUCGGUCGCGCCA | 77 | RD0260 |
Phage T5 (Virus) | (((((((..((((....-....-.)))).(((((.......)))))..---------------...(((((.......)))))))))))).... | 21 | Â |
RD0500 | GCCCGGGUGGUGCAGU--GGCCCAGCAUACGACCCUGUCACGGUCGUG---------------A-CGCGGGUUCAAAUCCCGCCUCGGGCGCCA | 76 | RD0500 |
Haloferax volcanii (Archæa) | (((((((..((((...--......)))).(((((.......)))))..---------------.-.(((((.......)))))))))))).... | 21 |  |
RD1140 | GGCCCCAUAGCGAAGUU-GGUU-AUCGCGCCUCCCUGUCACGGAGGAG---------------AUCACGGGUUCGAGUCCCGUUGGGGUCGCCA | 77 | RD1140 |
Mycoplasma capricolum (Eubacteria) | (((((((..((((....-....-.)))).(((((.......)))))..---------------...(((((.......)))))))))))).... | 21 | Â |
RD2640 | GGGAUUGUAGUUCAAUU-GGUC-AGAGCACCGCCCUGUCAAGGCGGAA---------------GAUGCGGGUUCGAGCCCCGUCAGUCCCGCCA | 77 | RD2640 |
Hordeum vulgare (Plant chloroplast) | (((((((..((((....-....-.)))).(((((.......)))))..---------------...(((((.......)))))))))))).... | 21 | Â |
RD4800 | AAAAAAUUAGUUUAAU--CA---AAAACCUUAGUAUGUCAAACUAAAA---------------A-AAUUAGAUCAU--CUAAUAUUUUUUACCA | 71 | RD4800 |
Aedes albopictus (Animal mitochondria) | (((((((..((((...--..---.)))).(((((.......)))))..---------------.-.(((((.....--)))))))))))).... | 21 | Â |
RE2140 | GCCCCCAUCGUCUAGA--GGCCUAGGACACCUCCCUUUCACGGAGGCG---------------A-CAGGGAUUCGAAUUCCCUUGGGGGUACCA | 76 | RE2140 |
Synechocystis sp. (Eubacteria) | (((((((..((((...--......)))).(((((.......)))))..---------------.-.(((((.......)))))))))))).... | 21 | Â |
RE6781 | UCCGUCGUAGUCUAGGUGGUUA--GGAUACUCGGCUCUCACCCGAGAG---------------A-CCCGGGUUCGAGUCCCGGCGACGGAACCA | 76 | RE6781 |
Hordeum vulgare (Plant chloroplast) | (((((((..((((.........--)))).(((((.......)))))..---------------.-.(((((.......)))))))))))).... | 21 | Â |
RF6320 | GUCGCAAUGGUGUAGUUGGGA---GCAUGACAGACUGAAGAUCUGUUG---------------GUCAUCGGUUCGAUCCCGGUUUGUGACACCA | 76 | RF6320 |
Schizosaccharomyces pombe (Fungi cytoplasm) | (((((((..((((........---)))).(((((.......)))))..---------------...(((((.......)))))))))))).... | 21 | Â |
RL0503 | GCGGGGGUGGCUGAGCCAGGCCAAAAGCGGCGGACUUAAGAUCCGCU-CCC--GUAG---GGGUUCGCGAGUUCGAAUCUCGUCCCCCGCACCA | 88 | RL0503 |
Haloferax volcanii (Archæa) | (((((((..((('...........'))).(((((.......))))).-(((--....---)))...(((((.......)))))))))))).... | 24 |  |
RL1141 | CCCCAAGUGGCGGAAUA-GGDA-GACGCAUUGGACUUAAAAUCCAAC-GGGC-UUAAU-AUCCUGUGCCGGUUCAAGUCCGGCCUUGGGGACCA | 89 | RL1141 |
Mycoplasma capricolum (Eubacteria) | (((((((..(((..... -.... -..))).(((((.......))))).-.... -.....-.......(((((.......)))))))))))).... | 20 | Â |
RS0380 | GCCGAGGUAGCAUAGCUUGGCC-AAUGCGGUUGCUUCGAGAGCAACG-UUCC-ACAC--GGACU-CAGGAGUUCAAAUCUCCUCCUCGGCGCCA | 88 | RS0380 |
Halobacterium cutirubrum (Archæa) | (((((((..((((.........-.)))).(((((.......))))).-'(((-....--)))'.-.(((((.......)))))))))))).... | 25 |  |
RS1141 | GGAAGAUUACCCAAGUCCGGCUGAAGGGAUCGGUCUUGAAAACCGAGAGUCGGGGAAACCGAG--CGGGGGUUCGAAUCCCUCAUCUUCCGCCA | 92 | RS1141 |
Mycoplasma capricolum (Eubacteria) | (((((((..((('...........'))).(((((.......)))))..'((((.....))))'--.(((((.......)))))))))))).... | 26 | Â |
Consensus structure | (((((((..(((.............))).(((((.......))))).................... (((((.......)))))))))))).... | 20 | Consensus |