Table 4 Results obtained under Setups (1) – (3). The medians reported in the table were calculated from 100 simulations. The median est.FDR values reported in Column 4 were obtained from sam2.20 and the symmetric cutoff method directly. The median est.FDRc values reported in Column 5 are the estimated FDR with FP correction (12).
Setup | Median M | Median true FDR sam2.20/sym.cutoff | Median est.FDR sam2.20/sym.cut | Median est. FDRc sam2.20/sym.cut | |
|---|---|---|---|---|---|
1 | Â | 199 | 0.1005/0.1005 | 0.1188/0.1238 | 0.0981/0.1020 |
2 | (i) | 210.5 | 0.7082/0.7779 | 0.6959/0.8130 | 0.6875/0.7945 |
| Â | (ii) | 211.5 | 0.6699/0.6748 | 0.6730/0.7219 | 0.6331/0.6933 |
| Â | (iii) | 207 | 0.6578/0.6533 | 0.6738/0.7039 | 0.6376/0.6616 |
| Â | (iv) | 200 | 0.5025/0.4371 | 0.5305/0.4846 | 0.5004/0.4403 |
3 | (i) | 399 | 0.0599/0.0800 | 0.0596/0.1017 | 0.0598/0.0779 |
| Â | (ii) | 399 | 0.1827/0.1754 | 0.1874/0.2135 | 0.1862/0.1758 |
| Â | (iii) | 399 | 0.2130/0.1989 | 0.21750/.2462 | 0.2168/0.2007 |
| Â | (iv) | 400.5 | 0.4913/0.3950 | 0.5067/0.4511 | 0.4975/0.3994 |