Table 2 Performance comparison of modularization methods
From: Semantic integration to identify overlapping functional modules in protein interaction networks
method | number of modules | average size of modules | -log(p-value) | parameters |
|---|---|---|---|---|
flow-based (semantic similarity) | 178 | 46.14 | 24.42 | min flow = 0.4 |
flow-based (semantic interactivity) | 189 | 40.40 | 29.05 | min flow = 0.1 |
CFinder | 57 | 17.86 | 12.32 | k = 3 |
betweenness-cut | 57 | 41.02 | 17.44 | max density = 0.03 |
STM | 60 | 40.10 | 13.70 | merging thres. = 1.0 |