Skip to main content

Table 1 Fold recognition: performance of the optimized energy functions on the Optimization and Test sets

From: Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets

Number of amino acid groups Optimization Set Test Set
  Q ¯ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGrbqugaqeaaaa@2DEF@ (%) D (%) Q ¯ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGrbqugaqeaaaa@2DEF@ (%) D(%)
2 74.3 69.8 74.4 70.0
3 76.4 72.2 75.3 72.0
4 87.5 84.4 87.4 84.6
6 88.3 86.7 91.9 89.4
20 94.4 91.9 91.3 88.4