Table 3 Four- and six-class energy parameters for fold recognition and dimer interface recognition. Best four- and six-class energy parameters (kcal/mol) for monomeric proteins (upper right) and dimer interface recognition (lower left)
From: Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets
H α | H β | H γ | P | Monomeric | ||||
|---|---|---|---|---|---|---|---|---|
-6.96 | 1.81 | -8.85 | 1.94 | H α = {LVIMC} | ||||
H α | -5.70 | -0.59 | 0.15 | 1.56 | H β = {AGSTP} | |||
H β | -0.60 | -0.02 | -6.41 | 1.53 | H γ = {FYW} | |||
H γ | -3.68 | -0.61 | -7.08 | -1.30 | P = {EDNQKRH} | |||
P | 1.75 | 0.04 | 0.63 | 1.21 | ||||
Dimeric | H α | Hβ' | H γ | P | ||||
H α | H β' | H γ | P α | P β | G | Monomeric | ||
-8.30 | 0.30 | -5.11 | 3.77 | 2.62 | 0.43 | H α = {LVIMC} | ||
H α | -2.06 | -1.35 | 1.49 | 0.42 | 1.30 | 2.54 | H β' = {ASTP} | |
H β' | 0.09 | -0.02 | -7.79 | 1.01 | 0.79 | -0.85 | H γ = {FYW} | |
H γ | -1.73 | -0.45 | -0.65 | 1.61 | -3.30 | 1.00 | P α = {EDNQ} | |
P α | 0.76 | 0.13 | 0.36 | 0.52 | 1.57 | -0.38 | P β = {KRH} | |
P β | 0.51 | -0.24 | -0.25 | -0.30 | 0.53 | -0.08 | G | |
G | -0.17 | 0.12 | -0.55 | 0.04 | 0.19 | 0.01 | ||
Dimeric | H α | H β' | H γ | P α | P β | G | ||