The utility of MAS5 expression summary and detection call algorithms

BMC Bioinformatics

Table 1 Correct and incorrect predictions for both algorithms

	MAS5 (found/actual number by real time)				RMA (found/actual number by real time)
	TP	FP	TN	FN	TP	FP	TN	FN
PP	8/8	1/1	0/0	0/0	8/8	1/1	0/0	0/0
PA	8/8	0/0	0/0	0/0	0/0	0/0	0/0	8/8
AARMA	0/0	0/0	4/4	9/9	9/9	4/4	0/0	0/0
AA	0/0	0/0	1/1	4/4	0/0	0/0	1/1	4/4

TP: True Positive. FP: False Positive. TN: True Negative. FN: False Negative. For example, for the PP set, MAS5 and RMA both found 8 TPs out of a total of 8 possible, and made 1 incorrect prediction, resulting in 1 FP.

ISSN: 1471-2105