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Table 3 Average correlations between expression levels of genes in a TM and the expression levels of associated TFs.

From: Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data

Factor Module Module description Correlation with module P value of correlation
FKH1 1 Cell Cycle 0.53 0.001
MCM1 1 Cell Cycle 0.14 0.007
INO4 1 Cell Cycle 0.22 0.029
GCN4 2 Amio Acid Metabolism 0.09 0.539
CBF1 2 Amio Acid Metabolism 0.17 0.079
MET4 2 Amio Acid Metabolism 0.00 0.497
INO4 2 Amio Acid Metabolism 0.33 0.001
MET31 2 Amio Acid Metabolism -0.14 0.789
SWI4 3 Cell Cycle 0.01 0.689
MCM1 3 Cell Cycle 0.04 0.079
FKH2 3 Cell Cycle -0.24 0.001
INO4 3 Cell Cycle 0.48 0.001
NDD1 3 Cell Cycle 0.39 0.001
GLN3 4 Sporulation -0.21 0.001
YFL044C 4 Sporulation 0.09 0.6
RCS1 4 Sporulation -0.37 0.001
HAP3 5 Protein Biosynthesis 0.12 0.003
RCS1 5 Protein Biosynthesis -0.24 0.001
ARG80 5 Protein Biosynthesis 0.09 0.142
MBP1 6 Cell Cycle -0.02 0.858
SWI4 6 Cell Cycle 0.02 0.841
SKN7 6 Cell Cycle -0.12 0.882
ASH1 6 Cell Cycle 0.24 0.156
ACE2 6 Cell Cycle -0.13 0.003
SWI6 6 Cell Cycle 0.12 0.227
STB1 6 Cell Cycle 0.15 0.001
SUM1 7 Sporulation 0.23 0.001
PHO4 7 Sporulation 0.39 0.001
MBP1 8 Cell Cycle -0.29 0.001
DOT6 8 Cell Cycle 0.16 0.001
SWI4 8 Cell Cycle 0.32 0.001
SWI6 8 Cell Cycle 0.03 0.445
SUM1 9 Sporulation 0.26 0.001
PDR1 10 Protein Biosynthesis -0.18 0.001
MET4 10 Protein Biosynthesis 0.06 0.001
RAP1 10 Protein Biosynthesis -0.17 0.001
FHL1 10 Protein Biosynthesis 0.04 0.001