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Table 4 Example with BCL2_HUMAN

From: Gene analogue finder: a GRID solution for finding functionally analogous gene products

Ranking

Symbol

UniProt

χ2

Common terms

Pfam

Organism

Local alignment

 

hit size

Identity %

1

BCL2_HUMAN

P10415

20080,7

62

Bcl-2

Homo sapiens

239

100.0

2

Bcl2

P49950

19405,8

61

Bcl-2

Rattus norvegicus

239

89.1

3

BCLX_HUMAN

Q07817

13329,9

44

Bcl-2

Homo sapiens

238

45.0

4

Becn1

Q91XJ1

10944,1

43

APG6

Rattus norvegicus

108

23.1

5

BNIP3_HUMAN

Q12983

10529

39

BNIP3

Homo sapiens

263

18.3

6

Bcl2l1

P53563

10426,8

45

Bcl-2

Rattus norvegicus

238

44.5

7

ATBI-1

Q9LD45

10199,5

34

UPF0005

Arabidopsis thaliana

152

18.4

8

API5_PONPY

Q5R644

10015,8

34

API5

Pongo pygmaeus

80

25.0

9

Q7ZY79_XENLA

Q7ZY79

10015,8

34

API5

Xenopus laevis

36

30.6

10

Mcl1

Q9Z1P3

9987,1

42

Bcl-2

Rattus norvegicus

185

30.3

11

MCL1_HUMAN

Q07820

9987,1

42

Bcl-2

Homo sapiens

265

23.4

12

AIF1_HUMAN

P55008

9494,6

37

-

Homo sapiens

33

30.3

13

O60667

O60667

9365,6

32

-

Homo sapiens

50

38.0

14

BI1_HUMAN

P55061

9345,2

34

UPF0005

Homo sapiens

155

19.4

15

Ets1

P41156

9302,5

42

Ets

Rattus norvegicus

53

28.3

16

API5_CHICK

Q5ZMW3

9245,1

34

API5

Gallus gallus

107

23.4

17

Bcl2l2

P70345

9232,3

30

Bcl-2

Mus musculus

235

37.0

18

Bnip1

Q8VHI8

9206,8

29

Sec20

Rattus norvegicus

25

32.0

19

BNIP1_HUMAN

Q12981

9206,8

29

Sec20

Homo sapiens

13

38.5

20

Son_predicted

Q6PDU3

9160,2

33

-

Rattus norvegicus

  

21

BNIPL_HUMAN

Q7Z465

9114,8

33

-

Homo sapiens

73

23.3

22

BCL2_BOVIN

O02718

9109,8

29

Bcl-2

Bos taurus

239

90.4

23

BCL2_CHICK

Q00709

9109,8

29

Bcl-2

Gallus gallus

246

74.4

24

BCL2_CRIGR

Q9JJV8

9109,8

29

Bcl-2

Cricetulus griseus

239

89.1

25

Api5

O35841

9083,1

32

API5

Mus musculus

80

25.0

26

Il1a

P16598

9080,0

43

IL1

Rattus norvegicus

92

21.7

27

IL1A_HUMAN

P01583

9077,8

43

IL1

Homo sapiens

42

26.2

28

Q9HD91

Q07820

9060,0

39

Bcl-2

Homo sapiens

265

23.4

29

Q9UNJ1

Q07820

9060,0

39

Bcl-2

Homo sapiens

265

23.4

30

Q8HYS5_CANFA

Q8HYS5

9060,0

39

Bcl-2

Canis familiaris

215

28.4

  1. The table contains the following information: The ranking of the potential functional analogues of BCL2_HUMAN according the χ2 – value, the gene name and the UniProt accession number, the χ2 – value, the number of common terms between a hit and BCL2_HUMAN, the Pfam name with short domain description the gene product belongs to, the organism the gene products is from, and the local alignment characteristics, such as hit length and the % identity of the hit, of the alignment between BCL2_HUMAN and the hit sequence.
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BMC Bioinformatics

ISSN: 1471-2105

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