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Table 4 Structures for the study of the performance of RNA-SSD as a function of primary structure constraints.

From: Computational RNA secondary structure design: empirical complexity and improved methods

No. Description (source) Size (bases) expected run time [CPU sec] number of multiloops number of of stems
1 VS ribozyme from Neurospora mitochondria 167 0.64 2 11
2 Bio-150-n38 172 0.53 1 9
3 Bio-150-nl4 167 12.94 2 10
4 Group II intron ribozyme D135 from Saccharomyces cerevisiae mitochondria 584 11.54 5 32
5 Bio-200-nl9 208 7.62 3 12
6 Bio-150-nl2 150 0.16   6
  1. Set of structures used to study the correlation between the primary structure constraints and the performance of RNA-SSD. Structures with similar characteristics (such as size, number of multiloops, etc.) appear in the same group. The structure Bio-150-nl2 was included in this set because it is relatively easy to design.