Table 1 The list of transition driving genes identified in cells grown in CSM and DSM

Adaptation to typical conditions

ypeB

Cell wall

ytcC, ykuG, ykoT, ywhE, yunA, cwlH

Germination

yaaH, yfkQ, yndD, gerBB, gerKB, yndE, gerAC, yfkR

Membrane bioenergetics

yhfW

Sporulation

spoVFA, spoVAD, spoVAC, spoVAE, spoVAB, spoVK, spoIVCA, cotC, cotA, yaaH, sspE, sspB

Transport/binding proteins and lipoproteins

ymfD, araP, yveA, ywcA, ywrK

Detoxification

ykoY

Regulation

sigG, splA

Antibiotic production

yitA, yitC

Carbohydrates and related molecules

yqiQ, adhB, yoaI, yesX, yitF, yqiQ

Metabolism of amino acids and related molecules

aprX, spoVFA

Metabolism of lipids

yngF

Phage-related function

yndL, yqbO, yqbQ

Proteins with unknown function

yodP, yheD, yhcQ, yvdQ, ytzC, yybC, ydfO, yhcV, yesV, yndM, ydfR, yngD, ykjA, yetA, yusN, yozN, yppD, ytlB, yqaN, ythQ, yycQ, yurS, yrkS, yxaG, yesJ, ysnE