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Table 1 The list of transition driving genes identified in cells grown in CSM and DSM

From: Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model

Functional categories Genes
Adaptation to typical conditions ypeB
Cell wall ytcC, ykuG, ykoT, ywhE, yunA, cwlH
Germination yaaH, yfkQ, yndD, gerBB, gerKB, yndE, gerAC, yfkR
Membrane bioenergetics yhfW
Sporulation spoVFA, spoVAD, spoVAC, spoVAE, spoVAB, spoVK, spoIVCA, cotC, cotA, yaaH, sspE, sspB
Transport/binding proteins and lipoproteins ymfD, araP, yveA, ywcA, ywrK
Detoxification ykoY
Regulation sigG, splA
Antibiotic production yitA, yitC
Carbohydrates and related molecules yqiQ, adhB, yoaI, yesX, yitF, yqiQ
Metabolism of amino acids and related molecules aprX, spoVFA
Metabolism of lipids yngF
Phage-related function yndL, yqbO, yqbQ
Proteins with unknown function yodP, yheD, yhcQ, yvdQ, ytzC, yybC, ydfO, yhcV, yesV, yndM, ydfR, yngD, ykjA, yetA, yusN, yozN, yppD, ytlB, yqaN, ythQ, yycQ, yurS, yrkS, yxaG, yesJ, ysnE