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Table 8 Benchmarking based on three standard decoy sets from the Decoys 'R' Us database

From: Benchmarking consensus model quality assessment for protein fold recognition

  4state_reduced Lattice_ssfit LMDS
Method Z-score Rank 1 Z-score Rank 1 Z-score Rank 1
ModFOLD 3.74 5/7 10.12 7/8 3.33 5/10
PROQ-LG 3.73 3/7 11.19 7/8 1.91 1/10
PROQ-MX 3.44 4/7 18.15 7/8 2.15 3/10
MODCHECK 2.20 3/7 5.05 8/8 1.64 3/10
ModSSEA 1.95 3/7 4.31 6/8 1.62 3/10
  1. Rank 1 – the number of native structures correctly ranked first by each method out of the total proteins in decoy set; Z-score – the average Z-scores calculated as the distance in standard deviations from the MQAP score of the native structure to the mean score of the decoy set.