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Figure 2 | BMC Bioinformatics

Figure 2

From: A cross-species alignment tool (CAT)

Figure 2

Speed comparisons for localized and chromosome-wide alignments. 1000 randomly selected mouse mRNAs are aligned against the human genome. In the localized plot, every data point represents the average of 50 alignments. In chromosome-wide plot, every data point is a single chromosome. This plot is limited to CAT, BLAT, and sim4 because they are the only ones that run in a reasonable amount of time and/or memory.

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BMC Bioinformatics

ISSN: 1471-2105

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