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Figure 8 | BMC Bioinformatics

Figure 8

From: SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA sequences

Figure 8

Searchpattool runtime and number of patterns study. At left, we run Searchpattool many times on a random input of 50 sequences by varying the value for the minimum support (from 100% to 40%) and the value for the maximum length of the pattern (from 7 to 35); and we record its running time and the total number of patterns. At right, we run Searchpattool on four random input sequences with respectively 10, 20, 50 and 100 sequences (400 bp for each sequence). For each input sequence we choose a minimum support value of 80% and a maximum length pattern value of 24, execute Searchpattool and record its running time and the total number of patterns.

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