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Table 1 All frequent patterns for family A

From: SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA sequences

Pattern Matches(No seq, 1st position) support total
AA [1,7] [7,5] 2 2
AG [1,1] [2,3] [2,5] [4,4] [6,4] [7,1] 4 6
AT [3,6] [4,2] [5,5] [6,2] 2 4
A.A [2,3] [3,6] [4,2] [6,2] 3 4
A.C [1,1] [2,5] [7,1] 2 3
A..G [2,3] [4,2] [4,4] [6,2] [7,1] 4 5
A...C [1,1] [2,3] [4,4] 2 3
A....A [3,3] [7,1] 2 2
  1. For each pattern, the occurrences of the patterns in the input sequences (Matches) -within the bracket you find the number of sequence (No seq) and the first position of the pattern (1st position)-, the number of matching sequences (support) and the total number of occurrences (total) are shown. All these patterns have a support greater or equal to 2.
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