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Table 4 HisH4 – Ranked list of differentially changing loci on overlapping strands, generated with a 5%FDR threshold

From: Differential analysis for high density tiling microarray data

Factor Time Interval Chr Annotation Strand Diff change Acetylation Summary %FDR GO
HisH4 00_02 1 TCFL1 AS -1.539 - 3.43 Transcription Factor Like1
HisH4 00_02 1 TCFL1 + PIP5K1A   -2.166 - 2.70  
HisH4 00_02 1 PIP5K1A S -2.373 - 2.72 Signal transduction
HisH4 02_08 1 TCFL1 AS 1.343 + 6.74  
HisH4 02_08 1 TCFL1 + PIP5K1A   1.545 + 6.74  
HisH4 02_08 1 PIP5K1A S NA NA NA  
HisH4 00_02 5 GDF9 AS NA NA NA Growth differentiation factor9
HisH4 00_02 5 GDF9 + QP-C   -1.129 - 4.11  
HisH4 00_02 5 QP-C S NA NA NA Part of the mitochondrial respiratory chain
HisH4 00_02 5 FGF1 AS -1.169 - 2.67 Fibroblast growth factor
HisH4 00_02 5 FGF1 + ARHGAP26   -1.169 - 2.67  
HisH4 00_02 5 ARHGAP26 S -1.502 - 2.67 Rho GTPase activating protein
HisH4 00_02 6 C6orf150 D24 AS NA NA NA  
HisH4 00_02 6 C6orf150+MTO1   -2.857 - 2.31  
HisH4 00_02 6 MTO1 S -2.623 - 2.31  
HisH4 02_08 6 C6orf150 AS NA NA NA MTO1: Cellular respiration
HisH4 02_08 6 C6orf150+MTO1   1.786 + 4.04  
HisH4 02_08 6 MTO1 S 1.695 + 4.04  
HisH4 00_02 6 SNX3 AS -2.600 - 2.31 Intracellular signalling cascade
HisH4 00_02 6 LACE1 S -1.954 - 4.35 Unknown
HisH4 02_08 6 SNX3 AS -0.849 - 4.04  
HisH4 02_08 6 SNX3+LACE1   0.828 + 4.04  
HisH4 02_08 6 LACE1 S 0.849 + 4.04  
HisH4 00_02 7 GCC1 AS NA NA NA DNA binding protein
HisH4 00_02 7 GCC1 + ARF5   -1.574 - 1.54  
HisH4 00_02 7 ARF5 AS NA NA NA Enzyme activator activity
HisH4 00_02 22 EIF4ENIF1 AS NA NA NA Translation initiation factor
HisH4 00_02 22 EIF4ENIF1 + SFI1   -1.407 - 4.95  
HisH4 00_02 22 SFI1 S NA NA NA Spindle assembly associated(yeast)
HisH4 00_02 22 SYN3 AS NA NA NA Cell-cell signaling
HisH4 00_02 22 SYN3+TIMP3   -1.253 - 4.95  
HisH4 00_02 22 TIMP3 S NA NA NA Enzyme Inhibitor activity
HisH4 00_02 21 GART AS -2.343 - 2.18 Cellular biosynthesis/catalytic activity
HisH4 00_02 21 GART+SON   -2.120 - 2.28  
HisH4 00_02 21 SON S -1.000 - 5.03 DNA binding
HisH4 00_02 X CXorf12 AS -0.855 - 3.18  
HisH4 00_02 X CXorf12+IRAK1   -0.840 - 3.09  
HisH4 00_02 X IRAK1 S -1.234 - 1.87 Interleukin-1 receptor binding