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Table 3 Gene Ontology classification and pathway visualization using all approaches

From: Linking microarray reporters with protein functions

  On Array Annotated In Pathway Gene Database On Local Pathways On GO Levels
Incyte UniGene I      
Old 9,596 9,370 3,730 924 3,130
TargetIdentifier 9,596 2,008 1,990 615 1,827
RefSeq 9,596 6,359 4,356 1,110 3,777
Our Approach 9,596 6,973 6,710 1,609 5,597
Agilent G2519A      
Old 41,013 17,325 17,041 2,351 10,554
RefSeq 41,013 25,625 15,763 2,286 10,408
Our Approach 41,013 27,077 25,694 2,927 14,482
  1. This table summarizes for each approach all reporters that could be imported and visualized using the GenMAPP program. A clear distinction has been made between the local MAPPs released on September 20th, 2006 and the Gene Ontology database, built in the MAPPFinder program of GenMAPP (Release date: August 25th, 2005). In general, improving the annotation yields better pathway visualization.
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