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Table 6 External Metabolites Abbreviation

From: Estimation of the number of extreme pathways for metabolic networks

Exchange Metabolite Abbreviation
12dgr_m 1,2-Diacylglycerol hx Hypoxanthine
23dpg 2,3-Phospho-D-glyceroyl phosphate hxan Hypoxanthine
2dmmq8 2-Demethylmenaquinone 8 ile-L L-Isoleucine
2dmmql8 2-Demethylmenaquinol 8 ino Inosine
3pg 3-Phospho-D-glycerate lac Lactate
ac Acetate lac-L L-Lactate
acac Acetoacetate leu-L L-Leucine
acald Acetaldehyde lys-L L-Lysine
ad Acetamide mal Malate
ade Adenine mal-L L-Malate
ado Adenosine meoh Methanol
adp ADP mql8 Menaquinol 8
akg 2-Oxoglutarate mqn8 Menaquinone 8
ala-L L-Alanine nad Nicotinamide adenine dinucleotide
ala-S S-Alanine nadh Nicotinamide adenine dinucleotide – reduced
amp AMP nadp Nicotinamide adenine dinucleotide phosphate
arachd Arachidonic Acid (C20:4) nadph Nicotinamide adenine dinucleotide phosphate – reduced
asp-L L-Asparagine nh3 Ammonium
atp ATP nh4 Ammonium Ion
bhb (2)-3-Hydroxybuanoate o2 O2
ch4 Methan oaa Oxaloacetate
co2 CO2 ocdc All octadecanoate, octadecenoate, octadecynoate
coa Coenzyme A ocdca octadecanoate
crvnc Cervonic Acid (C22:6, n-3) ocdcea octadecenoate
cys-L L-Cysteine ocdcya octadecynoate
e4p D-Erythrose 4-phosphate orn Ornithine
etoh Ethanol pep Phosphoenolpyruvate
fad Flavin adenine dinucleotide phe-L L-Phenylalanine
fadh2 Flavin adenine dinucleotide (reduced form) pheme Protoheme
fe2 Iron (II) phs-L Phospholipid
fe3 Iron (III) pi Phosphate
for Formate ppi Diphosphate
fum Fumarate pro-L L-Proline
glc Glucose ps_m Phosphatidylserine
glc-D D-Glucose pyr Pyruvate
glu-L L-Glutamate q8 Ubiquinone-8
gly Glycine q8h2 Ubiquinol-8
glyc Glycerol r5p alpha-D-Ribose 5-phosphate
glyc3p Glycerol 3-phosphate ser-L L-Serine
gsn Guanosine so4 Sulfate
gua Guanine succ Succinate
h H+ thr-L L-Threonine
h2 H2 trp-L L-Tryptophan
h2co3 carbonic acid tyr-L L-Tyrosine
h2o H2O urea Urea
hdca Hexadecanoate (n-C16:0) val-L L-Valine
  1. Abbreviations of all external metabolite found in the 68 models used in this study.