|
Family
|
Avg. sequence identity
|
MCC
|
|---|
| | |
RNAspa
|
RNAcast
|
| | | |
-t 5 -c 10 (default)
|
-t 5 -c 20
|
-t 3 -c 10
|
-t 3 -c 20
|
|
lin4
|
66%
|
0.86
|
0.73
|
0.73
|
no data
|
0.72
|
|
tRNA
|
50%
|
0.81
|
0.42
|
0.42
|
no data
|
0.65
|
|
5S RNA
|
59%
|
0.58
|
0.62
|
0.62
|
no data
|
0.84
|
|
U2
|
78%
|
0.74
|
0.72
|
0.72
|
0.69
|
0.69
|
|
S box riboswitch
|
67%
|
0.75
|
0.69
|
0.69
|
0.78
|
0.78
|
|
SRP RNA
|
52%
|
0.95
|
0.99
|
0.99
|
0.94
|
0.94
|
|
IRES
|
66%
|
0.97
|
0.93
|
0.93
|
0.90
|
0.90
|
|
Purine riboswitch
|
56%
|
0.93
|
0.78
|
0.78
|
0.81
|
0.81
|
|
U1
|
65%
|
0.67
|
0.72
|
0.72
|
no data
|
0.76
|
|
U12
|
83%
|
0.76
|
0.50
|
0.50
|
no data
|
0.68
|
- RNAcast was run using four different configurations. RNAcast parameters that were used: -t sets the shape type (default: 5). Shape type defines the level of abstraction from most accurate to most abstract (1–5). -c sets the energy range (default: 10%). For seven out the ten families RNAspa gave better results. See [Additional File 7] for raw data.
