From: Statistical power of phylo-HMM for evolutionarily conserved element detection
Parameter | Value | ||||
---|---|---|---|---|---|
expected length L = 1/μ: | 50 | ||||
expected coverage P = ν/μ + ν): | 0.25 | ||||
background probability π: | A | C | G | T | |
0.24034 | 0.25518 | 0.26097 | 0.24351 | ||
A | C | G | T | ||
substitution rate matrix Q (type:REV): | -1.02446 | 0.23112 | 0.58662 | 0.20672 | A |
0.21767 | -0.99759 | 0.20665 | 0.57327 | C | |
0.54024 | 0.20206 | -0.95781 | 0.21551 | G | |
0.20402 | 0.60073 | 0.23095 | -1.03570 | T | |
un-rooted branch length β: | dog | human | mouse | rat | middle |
0.56496 | 0.33361 | 0.09604 | 0.10016 | 0.35807 | |
conservation ratio ρ: | 0.32 |